JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR85_chr7_113077285_113091827	0/0	t0081	2119	1	0	0	1	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0082	2119	1	0	0	1	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0083	2118	1	0	0	0	0	1	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0084	2122	1	1	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0085	2118	1	0	0	1	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0086	2122	1	0	1	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0087	2121	1	1	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0088	2123	1	1	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0089	2121	1	1	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0090	2121	1	1	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0091	2119	1	1	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0092	2119	1	0	1	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0093	2123	1	0	1	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	t0094	2123	1	0	0	0	0	1	copy fasta	GPR85	chr7	113077285	113091827
GPR87_chr3_151289086_151321820	1/1	t0001	417	181	50	26	81	11	11	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	t0002	417	145	47	26	55	5	12	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	t0003	417	67	0	20	31	2	14	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	t0004	417	44	0	3	35	0	6	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	t0005	417	2	0	0	0	0	2	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	t0006	417	2	0	0	2	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	t0007	417	1	0	0	1	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	t0008	417	1	1	0	0	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	t0009	417	1	0	0	0	0	1	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	t0010	417	1	0	0	1	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	t0011	417	1	0	1	0	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR88_chr1_100533139_100547021	0/0	t0001	2338	124	6	17	85	5	11	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0002	2338	81	14	21	33	4	9	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0003	2338	73	39	11	20	0	3	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/1	t0004	2338	57	0	15	24	2	15	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0005	2338	38	2	5	22	2	7	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0006	2338	10	10	0	0	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0007	2338	9	5	1	3	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0008	2338	6	0	1	4	0	1	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0009	2338	5	5	0	0	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0010	2338	3	0	0	3	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	1/0	t0011	2338	3	2	0	0	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0012	2338	3	2	0	1	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0013	2338	3	3	0	0	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0014	2338	2	2	0	0	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0015	2338	1	0	0	0	0	1	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0016	2338	1	0	0	1	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0017	2338	1	0	1	0	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0018	2338	1	1	0	0	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0019	2338	1	0	0	0	1	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0020	2338	1	0	0	1	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0021	2338	1	0	0	0	0	1	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0022	2338	1	0	0	1	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	t0023	2338	1	1	0	0	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR89A_chr1_145602988_145675650	1/1	t0001	757	264	66	46	110	10	30	copy fasta	GPR89A	chr1	145602988	145675650
GPR89A_chr1_145602988_145675650	0/0	t0002	757	4	4	0	0	0	0	copy fasta	GPR89A	chr1	145602988	145675650