JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPR89A_chr1_145602988_145675650	0/0	t0003	757	3	3	0	0	0	0	copy fasta	GPR89A	chr1	145602988	145675650
GPR89A_chr1_145602988_145675650	0/0	t0004	757	1	0	0	1	0	0	copy fasta	GPR89A	chr1	145602988	145675650
GPR89A_chr1_145602988_145675650	0/0	t0005	757	1	1	0	0	0	0	copy fasta	GPR89A	chr1	145602988	145675650
GPR89A_chr1_145602988_145675650	0/0	t0006	757	1	0	0	1	0	0	copy fasta	GPR89A	chr1	145602988	145675650
GPR89B_chr1_147923420_147998592	1/1	t0001	793	240	55	43	102	10	28	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	t0002	793	14	3	0	11	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	t0003	793	10	7	3	0	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	t0004	794	6	5	1	0	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	t0005	793	1	1	0	0	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	t0006	793	1	0	1	0	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	t0007	793	1	1	0	0	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	t0008	793	1	0	0	1	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPRASP1_chrX_102646483_102664083	0/0	t0001	1713	144	55	13	56	6	14	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	1/1	t0002	1714	135	18	32	60	7	16	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	t0003	1714	30	0	4	26	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	t0004	1715	5	5	0	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	t0005	1715	3	0	0	3	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	t0006	1713	2	0	0	2	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	t0007	1714	1	0	0	1	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	t0008	1695	1	0	0	1	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	t0009	1710	1	0	0	1	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	t0010	1716	1	0	0	1	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP2_chrX_102707448_102722733	1/1	t0001	1020	182	43	40	77	9	11	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0002	1020	45	11	1	27	1	5	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0003	1020	35	5	4	16	0	10	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0004	1020	10	0	1	9	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0005	1020	4	4	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0006	1020	3	0	0	3	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0007	1020	2	0	1	0	1	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0008	1020	2	0	0	2	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0009	1020	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0010	1020	1	1	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0011	1018	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0012	1022	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0013	1020	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0014	1020	1	1	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0015	1020	1	1	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0016	1020	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0017	1020	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	t0018	1021	1	0	0	0	0	1	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP3_chrX_102715743_102758540	0/0	t0001	3511	161	16	30	92	6	17	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0002	3511	36	3	1	26	1	5	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	1/1	t0003	3512	18	6	6	1	0	3	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0004	3510	14	12	0	1	0	1	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0005	3511	8	8	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0006	3511	6	5	1	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0007	3512	4	3	1	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0008	3509	4	4	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0009	3511	3	3	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0010	3511	2	0	0	0	2	0	copy fasta	GPRASP3	chrX	102715743	102758540