JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPRASP3_chrX_102715743_102758540	0/0	t0011	3512	2	0	0	2	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0012	3511	2	2	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0013	3511	1	0	1	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0014	3512	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0015	3511	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0016	3518	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0017	3510	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0018	3511	1	1	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0019	3511	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0020	3510	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0021	3511	1	0	0	0	0	1	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0022	3511	1	1	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0023	3511	1	0	1	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0024	3513	1	0	0	0	0	1	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0025	3512	1	1	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0026	3512	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0027	3511	1	1	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0028	3510	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0029	3512	1	1	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	t0030	3511	1	1	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRC5A_chr12_12886562_12922937	0/0	t0001	5507	19	3	6	10	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0002	5511	13	0	1	11	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0003	5515	12	2	0	10	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0004	5503	5	1	0	4	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0005	5519	5	0	1	4	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/1	t0006	5523	5	0	1	2	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0007	5509	4	0	0	4	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0008	5512	4	0	0	3	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0009	5519	4	0	4	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0010	5499	3	1	0	2	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0011	5511	3	0	0	3	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0012	5533	3	3	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0013	5517	3	1	1	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0014	5519	3	0	0	3	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0015	5516	3	3	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0016	5504	2	0	0	1	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0017	5512	2	0	1	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0018	5510	2	0	0	1	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0019	5511	2	0	0	2	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0020	5509	2	0	1	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0021	5517	2	0	0	2	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0022	5516	2	1	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0023	5518	2	0	0	2	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0024	5503	2	0	0	2	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0025	5517	2	2	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0026	5503	2	0	2	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0027	5511	2	0	0	2	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0028	5529	2	0	2	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0029	5525	2	0	0	1	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0030	5515	2	0	0	1	1	0	copy fasta	GPRC5A	chr12	12886562	12922937