JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
GPRC5A_chr12_12886562_12922937	0/0	t0081	5508	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0082	5508	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0083	5516	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0084	5513	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0085	5514	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0086	5510	1	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0087	5512	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0088	5518	1	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0089	5509	1	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0090	5514	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0091	5527	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0092	5514	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0093	5516	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0094	5516	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0095	5514	1	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0096	5516	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0097	5521	1	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0098	5511	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0099	5517	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0100	5513	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0101	5514	1	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0102	5518	1	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0103	5522	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0104	5524	1	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0105	5521	1	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0106	5523	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0107	5522	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0108	5524	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0109	5527	1	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0110	5511	1	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0111	5515	1	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0112	5519	1	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0113	5512	1	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0114	5519	1	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0115	5507	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0116	5511	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0117	5497	1	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0118	5511	1	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0119	5538	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0120	5529	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0121	5530	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0122	5539	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0123	5521	1	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0124	5524	1	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0125	5523	1	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0126	5532	1	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0127	5518	1	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0128	5501	1	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0129	5501	1	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0130	5508	1	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937