JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPRC5A_chr12_12886562_12922937	0/0	t0131	5503	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0132	5507	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0133	5510	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0134	5507	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	1/0	t0135	5509	1	0	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0136	5523	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0137	5523	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0138	5521	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0139	5515	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0140	5519	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0141	5527	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0142	5505	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0143	5507	1	0	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0144	5517	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0145	5528	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0146	5525	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0147	5523	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0148	5531	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0149	5517	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0150	5513	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0151	5523	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0152	5527	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0153	5525	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0154	5513	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0155	5517	1	0	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0156	5532	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0157	5531	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0158	5527	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0159	5537	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0160	5529	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0161	5529	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0162	5519	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0163	5530	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0164	5530	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0165	5517	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0166	5523	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0167	5527	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0168	5543	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0169	5543	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0170	5524	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0171	5531	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0172	5535	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0173	5519	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0174	5533	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0175	5520	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0176	5524	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0177	5540	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0178	5528	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0179	5518	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0180	5529	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937