JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPRC5A_chr12_12886562_12922937	0/0	t0181	5531	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0182	5529	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0183	5521	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0184	5531	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0185	5561	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0186	5554	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0187	5531	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0188	5535	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0189	5536	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0190	5543	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0191	5547	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0192	5515	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0193	5508	1	0	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0194	5512	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0195	5517	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0196	5518	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0197	5524	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0198	5527	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0199	5516	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0200	5495	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0201	5529	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0202	5517	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0203	5513	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0204	5516	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0205	5517	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0206	5519	1	0	0	0	1	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0207	5517	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0208	5512	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0209	5531	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0210	5520	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0211	5515	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0212	5523	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0213	5521	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0214	5513	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0215	5521	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0216	5520	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0217	5522	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0218	5524	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0219	5524	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0220	5526	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0221	5521	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0222	5525	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0223	5523	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0224	5528	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0225	5528	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0226	5527	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0227	5525	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0228	5528	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0229	5538	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0230	5529	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937