JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPRC5A_chr12_12886562_12922937	0/0	t0281	5517	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0282	5519	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0283	5529	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0284	5527	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0285	5537	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0286	5512	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0287	5512	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0288	5516	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0289	5519	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0290	5523	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	t0291	5513	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5B_chr16_19851691_19889848	0/0	t0001	3932	103	28	16	51	2	6	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0002	3932	72	2	2	53	2	13	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/1	t0003	3932	68	6	19	25	6	11	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0004	3932	63	10	12	33	0	8	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0005	3931	15	6	5	1	3	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0006	3933	8	0	4	1	0	3	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0007	3930	8	8	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0008	3927	8	6	2	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0009	3931	7	0	2	4	0	1	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0010	3931	7	4	0	2	0	1	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0011	3932	6	6	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0012	3932	6	0	0	6	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	1/0	t0013	3932	4	1	1	0	1	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0014	3932	2	0	2	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0015	3932	2	0	0	2	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0016	3933	2	1	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0017	3931	2	2	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0018	3933	2	0	1	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0019	3932	2	2	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0020	3931	2	0	1	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0021	3933	2	0	0	2	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0022	3932	1	0	0	0	0	1	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0023	3933	1	0	1	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0024	3932	1	0	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0025	3932	1	1	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0026	3932	1	0	1	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0027	3932	1	0	1	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0028	3931	1	1	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0029	3932	1	1	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0030	3933	1	1	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0031	3932	1	1	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0032	3931	1	1	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0033	3932	1	1	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0034	3932	1	1	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0035	3932	1	0	1	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0036	3933	1	0	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0037	3932	1	0	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	t0038	3932	1	0	1	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5C_chr17_74427088_74452429	0/1	t0001	488	264	65	41	115	11	31	copy fasta	GPRC5C	chr17	74427088	74452429