Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCG8_chr2_43833971_43887988	0/0	t0091	5161	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0092	5160	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0093	5163	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0094	5159	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0095	5160	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0096	5159	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0097	5158	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0098	5163	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0099	5155	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0100	5160	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0101	5159	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0102	5160	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0103	5160	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0104	5164	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0105	5164	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0106	5156	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0107	5158	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0108	5154	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0109	5154	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0110	5156	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0111	5163	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0112	5160	1	0	0	0	1	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0113	5162	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0114	5162	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0115	5163	1	0	0	0	1	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0116	5162	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0117	5162	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0118	5163	1	0	0	1	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0119	5163	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0120	5154	1	0	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0121	5156	1	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0122	5162	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0123	5160	1	1	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABHD10_chr3_111974026_111998368	1/0	t0001	1684	311	58	55	149	7	41	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/1	t0002	1686	75	20	13	29	8	4	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0003	1679	9	3	3	0	1	2	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0004	1684	5	5	0	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0005	1685	5	5	0	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0006	1684	3	0	0	3	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0007	1688	3	0	0	3	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0008	1684	2	2	0	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0009	1684	2	0	0	2	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0010	1684	2	0	0	2	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0011	1684	1	1	0	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0012	1684	1	0	0	1	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0013	1684	1	0	1	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0014	1684	1	0	0	1	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0015	1684	1	0	1	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0016	1684	1	0	0	0	0	1	copy fasta	ABHD10	chr3	111974026	111998368
ABHD10_chr3_111974026_111998368	0/0	t0017	1684	1	0	1	0	0	0	copy fasta	ABHD10	chr3	111974026	111998368