Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMER2_chr13_25156679_25177288	0/0	t0074	8595	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0075	8595	1	0	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0076	8595	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0077	8597	1	0	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0078	8594	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0079	8595	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0080	8596	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0081	8596	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0082	8595	1	0	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0083	8595	1	0	1	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0084	8595	1	0	0	0	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0085	8595	1	0	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0086	8595	1	0	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0087	8596	1	0	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0088	8595	1	0	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0089	8594	1	0	0	0	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0090	8595	1	0	0	1	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0091	8595	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0092	8595	1	1	0	0	0	0	copy fasta	AMER2	chr13	25156679	25177288
AMER2_chr13_25156679_25177288	0/0	t0093	8595	1	0	0	0	0	1	copy fasta	AMER2	chr13	25156679	25177288
AMER3_chr2_130750540_130773134	0/1	t0001	3631	202	24	48	95	13	21	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0002	3632	30	5	5	17	0	3	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0003	3631	29	0	8	16	0	5	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0004	3628	9	8	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	1/0	t0005	3631	9	5	2	0	1	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0006	3632	7	0	0	5	0	2	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0007	3632	7	4	2	0	0	1	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0008	3630	6	2	0	3	1	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0009	3631	5	0	0	0	2	3	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0010	3633	5	1	0	4	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0011	3632	4	4	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0012	3631	3	0	0	2	0	1	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0013	3633	3	3	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0014	3629	2	2	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0015	3632	2	0	0	0	0	2	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0016	3628	2	0	0	2	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0017	3631	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0018	3632	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0019	3631	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0020	3628	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0021	3631	1	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0022	3631	1	0	0	0	1	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0023	3632	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0024	3631	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0025	3632	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0026	3631	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0027	3633	1	0	0	0	0	1	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0028	3633	1	0	0	0	0	1	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0029	3632	1	0	0	0	0	1	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0030	3631	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134