JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPRC5C_chr17_74427088_74452429	1/0	t0002	488	56	18	2	32	1	2	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	t0003	488	10	9	1	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	t0004	488	3	3	0	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	t0005	488	1	1	0	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	t0006	488	1	1	0	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	t0007	488	1	0	0	1	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	t0008	488	1	0	0	0	0	1	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	t0009	488	1	1	0	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5D_chr12_12935575_12957170	1/1	t0001	310	390	78	80	170	18	42	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	t0002	310	8	4	2	0	0	2	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	t0003	310	6	6	0	0	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	t0004	310	1	1	0	0	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	t0005	310	1	1	0	0	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC6A_chr6_116787085_116834083	1/1	t0001	128	368	90	66	152	12	46	copy fasta	GPRC6A	chr6	116787085	116834083
GPRIN1_chr5_176590802_176615156	1/0	t0001	1208	314	58	51	156	11	37	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0002	1211	44	5	22	5	5	7	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0003	1208	9	6	3	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0004	1208	6	6	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0005	1208	5	5	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0006	1208	3	3	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0007	1221	2	0	0	2	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0008	1208	2	0	0	0	2	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0009	1208	2	2	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0010	1203	1	1	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0011	1208	1	0	1	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0012	1211	1	1	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0013	1211	1	0	1	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0014	1208	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0015	1208	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0016	1208	1	1	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0017	1208	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0018	1208	1	1	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	t0019	1208	1	1	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN2_chr10_46536736_46561658	0/0	t0001	7904	23	0	1	21	1	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0002	7906	23	0	0	23	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/1	t0003	7904	20	0	2	15	0	2	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0004	7901	9	0	2	6	1	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0005	7903	7	0	0	5	1	1	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0006	7903	6	1	1	3	1	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0007	7901	6	0	0	6	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0008	7902	4	0	1	0	2	1	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0009	7904	2	0	0	2	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0010	7903	2	2	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0011	7901	2	0	0	2	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0012	7901	2	0	0	2	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0013	7904	2	0	0	2	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0014	7904	1	1	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0015	7904	1	1	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0016	7903	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0017	7904	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658