JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPRIN2_chr10_46536736_46561658	0/0	t0018	7904	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0019	7904	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0020	7904	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0021	7904	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0022	7904	1	1	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0023	7904	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0024	7904	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0025	7904	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0026	7904	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0027	7906	1	0	0	0	0	1	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0028	7906	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0029	7904	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0030	7906	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0031	7906	1	0	1	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0032	7903	1	1	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0033	7901	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0034	7903	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0035	7906	1	1	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0036	7903	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0037	7901	1	0	0	0	0	1	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0038	7901	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	1/0	t0039	7903	1	0	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0040	7904	1	1	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0041	7904	1	0	0	0	0	1	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0042	7904	1	0	0	0	0	1	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	t0043	7918	1	1	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN3_chr4_89231383_89312800	0/1	t0001	11707	40	9	17	10	1	2	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0002	11708	34	16	8	8	1	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0003	11707	26	1	5	19	1	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0004	11708	16	4	2	8	1	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	1/0	t0005	11707	16	3	10	1	1	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0006	11707	12	3	6	2	0	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0007	11708	9	0	0	5	0	4	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0008	11708	8	0	1	5	0	2	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0009	11708	7	0	0	7	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0010	11710	7	2	0	4	0	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0011	11708	5	0	0	5	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0012	11710	5	0	0	4	1	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0013	11708	5	4	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0014	11708	5	5	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0015	11708	5	0	0	4	0	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0016	11707	5	3	0	1	1	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0017	11710	4	0	0	4	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0018	11710	4	0	0	4	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0019	11710	3	0	0	3	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0020	11708	3	0	0	0	0	3	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0021	11708	3	0	0	0	0	3	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0022	11709	3	0	0	3	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0023	11707	3	0	0	3	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0024	11708	3	3	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800