JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPRIN3_chr4_89231383_89312800	0/0	t0075	11707	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0076	11708	1	0	0	0	0	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0077	11708	1	0	0	0	0	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0078	11710	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0079	11707	1	0	0	0	1	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0080	11709	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0081	11708	1	0	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0082	11710	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0083	11707	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0084	11707	1	0	0	0	0	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0085	11708	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0086	11707	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0087	11710	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0088	11712	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0089	11708	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0090	11710	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0091	11707	1	0	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0092	11708	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0093	11708	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0094	11708	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0095	11709	1	0	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0096	11707	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0097	11707	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0098	11708	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0099	11708	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0100	11707	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0101	11708	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0102	11708	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0103	11708	1	0	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0104	11708	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0105	11708	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0106	11710	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0107	11708	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0108	11706	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0109	11707	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0110	11707	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0111	11706	1	0	0	0	0	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0112	11707	1	0	0	0	0	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0113	11707	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0114	11707	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0115	11707	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0116	11707	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0117	11706	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0118	11706	1	0	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0119	11708	1	0	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0120	11708	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0121	11708	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0122	11708	1	0	0	0	0	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0123	11708	1	0	0	0	0	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0124	11710	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800