JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPRIN3_chr4_89231383_89312800	0/0	t0125	11710	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0126	11710	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0127	11708	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0128	11710	1	0	0	0	0	1	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0129	11709	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0130	11707	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	t0131	11707	1	0	0	0	1	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPS1_chr17_82046898_82062470	1/1	t0001	378	429	93	83	191	16	44	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	t0002	378	3	3	0	0	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	t0003	378	2	0	0	0	0	2	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	t0004	378	2	0	1	0	1	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	t0005	378	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	t0006	378	1	0	0	0	1	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	t0007	378	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	t0008	378	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS2_chr17_7307661_7320360	1/1	t0001	193	414	94	82	180	14	42	copy fasta	GPS2	chr17	7307661	7320360
GPSM1_chr9_136322539_136364601	1/0	t0001	1539	212	47	34	94	11	25	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0002	1539	69	9	34	14	2	10	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/1	t0003	1539	34	1	6	22	4	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0004	1539	32	7	0	19	1	5	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0005	1539	9	7	2	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0006	1539	8	5	2	0	0	1	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0007	1539	4	0	0	1	0	3	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0008	1539	3	3	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0009	1539	3	0	2	0	0	1	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0010	1527	3	3	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0011	1539	2	0	0	2	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0012	1539	2	0	0	2	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0013	1539	2	0	0	2	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0014	1539	1	0	0	0	0	1	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0015	1539	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0016	1539	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0017	1539	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0018	1539	1	0	0	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0019	1539	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0020	1539	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0021	1539	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0022	1539	1	0	1	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0023	1539	1	0	1	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0024	1539	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0025	1539	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0026	1539	1	0	0	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0027	1539	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0028	1539	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0029	1539	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	t0030	1527	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM2_chr1_108871985_108939545	1/0	t0001	5098	82	21	19	29	3	9	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0002	5098	48	1	6	32	3	6	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0003	5098	13	12	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0004	5103	9	1	0	3	0	5	copy fasta	GPSM2	chr1	108871985	108939545