JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPSM2_chr1_108871985_108939545	0/0	t0005	5243	9	5	4	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0006	4952	8	0	1	5	2	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0007	5098	6	6	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0008	5098	6	5	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0009	4952	5	3	0	0	2	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0010	4953	5	5	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0011	5099	4	0	2	0	0	2	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0012	5102	4	0	0	4	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0013	5103	4	0	0	1	0	3	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0014	5094	3	3	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0015	5098	3	0	3	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0016	5098	3	0	0	3	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0017	5099	3	0	0	2	0	1	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0018	5099	3	2	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0019	4952	3	2	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0020	5098	3	3	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0021	5098	3	0	0	0	2	1	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0022	5099	2	2	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0023	5098	2	2	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0024	5098	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0025	4952	1	0	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0026	5099	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0027	5098	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0028	5098	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0029	5098	1	0	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0030	5098	1	0	0	0	0	1	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0031	5103	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0032	5098	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0033	5101	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0034	5099	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/1	t0035	5098	1	0	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0036	5098	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0037	5099	1	0	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0038	5098	1	0	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0039	5098	1	0	0	0	0	1	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0040	5098	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0041	5098	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0042	5098	1	0	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0043	5099	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0044	5099	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0045	4953	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0046	5098	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0047	5098	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0048	5098	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0049	5098	1	0	0	0	0	1	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0050	4965	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0051	5098	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	t0052	5098	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM3_chr6_32185766_32197643	0/1	t0001	731	433	89	80	203	16	44	copy fasta	GPSM3	chr6	32185766	32197643
GPSM3_chr6_32185766_32197643	0/0	t0002	730	3	3	0	0	0	0	copy fasta	GPSM3	chr6	32185766	32197643