JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPSM3_chr6_32185766_32197643	0/0	t0003	731	2	0	0	0	0	2	copy fasta	GPSM3	chr6	32185766	32197643
GPSM3_chr6_32185766_32197643	0/0	t0004	731	2	2	0	0	0	0	copy fasta	GPSM3	chr6	32185766	32197643
GPSM3_chr6_32185766_32197643	0/0	t0005	731	1	0	0	1	0	0	copy fasta	GPSM3	chr6	32185766	32197643
GPT2_chr16_46879362_46936289	1/0	t0001	2421	118	61	25	10	9	12	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	t0002	2420	60	10	12	23	3	12	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	t0003	2420	3	0	2	1	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	t0004	2421	2	2	0	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	t0005	2420	2	0	2	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	t0006	2420	2	0	0	2	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	t0007	2421	1	0	0	0	0	1	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	t0008	2421	1	0	1	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	t0009	2421	1	1	0	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	t0010	2421	1	1	0	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	t0011	2410	1	1	0	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/1	t0012	2421	1	0	0	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	t0013	2421	1	0	0	0	0	1	copy fasta	GPT2	chr16	46879362	46936289
GPT_chr8_144499140_144512172	1/1	t0001	338	352	84	71	146	15	34	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	t0002	339	15	0	0	11	0	4	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	t0003	339	10	10	0	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	t0004	338	6	0	3	0	1	2	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	t0005	339	1	1	0	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	t0006	338	1	1	0	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	t0007	338	1	0	0	1	0	0	copy fasta	GPT	chr8	144499140	144512172
GPX1_chr3_49352176_49363353	1/1	t0001	288	240	73	44	82	10	29	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	t0002	288	75	18	18	23	8	8	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	t0003	288	7	0	0	7	0	0	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	t0004	288	2	0	0	2	0	0	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	t0005	288	1	1	0	0	0	0	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	t0006	288	1	0	0	0	0	1	copy fasta	GPX1	chr3	49352176	49363353
GPX2_chr14_64934158_64947745	1/1	t0001	350	413	92	66	190	16	47	copy fasta	GPX2	chr14	64934158	64947745
GPX2_chr14_64934158_64947745	0/0	t0002	350	1	0	0	0	0	1	copy fasta	GPX2	chr14	64934158	64947745
GPX3_chr5_151015591_151033988	1/1	t0001	923	242	64	57	86	11	22	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0002	923	107	9	5	81	1	11	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0003	923	54	1	6	34	2	11	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0004	923	27	5	3	17	0	2	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0005	923	19	17	2	0	0	0	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0006	923	8	0	6	0	1	1	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0007	923	5	0	0	5	0	0	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0008	923	2	1	1	0	0	0	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0009	923	2	0	0	2	0	0	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0010	923	1	0	0	0	0	1	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0011	923	1	0	1	0	0	0	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0012	923	1	0	1	0	0	0	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0013	923	1	0	0	0	1	0	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0014	923	1	1	0	0	0	0	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	t0015	923	1	0	0	1	0	0	copy fasta	GPX3	chr5	151015591	151033988
GPX4_chr19_1098994_1111779	0/0	t0001	258	269	57	63	108	11	30	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	1/1	t0002	258	149	30	23	70	7	17	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	t0003	258	2	2	0	0	0	0	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	t0004	258	2	2	0	0	0	0	copy fasta	GPX4	chr19	1098994	1111779