JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPX4_chr19_1098994_1111779	0/0	t0005	258	2	1	0	0	0	1	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	t0006	258	1	0	0	0	0	1	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	t0007	258	1	0	0	0	0	1	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	t0008	258	1	1	0	0	0	0	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	t0009	258	1	1	0	0	0	0	copy fasta	GPX4	chr19	1098994	1111779
GPX5_chr6_28520881_28539955	0/1	t0001	922	190	23	36	90	10	30	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	t0002	922	180	54	32	77	2	15	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	t0003	922	29	8	2	16	1	2	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	t0004	922	6	6	0	0	0	0	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	t0005	922	2	0	1	0	1	0	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	t0006	922	1	0	1	0	0	0	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	t0007	922	1	0	0	1	0	0	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	t0008	922	1	1	0	0	0	0	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	t0009	922	1	0	0	0	0	1	copy fasta	GPX5	chr6	28520881	28539955
GPX6_chr6_28498296_28520793	1/0	t0001	1047	167	25	34	79	8	20	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0002	1055	74	3	14	49	0	8	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0003	1055	36	1	4	25	1	5	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0004	1053	28	11	1	13	1	2	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0005	1045	27	13	9	5	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/1	t0006	1049	18	2	1	10	1	3	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0007	1049	14	13	1	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0008	1049	9	4	0	4	0	1	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0009	1053	7	1	0	6	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0010	1057	7	5	2	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0011	1057	6	0	0	6	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0012	1055	5	5	0	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0013	1045	5	3	2	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0014	1045	4	0	3	0	1	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0015	1057	4	0	0	3	0	1	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0016	1051	3	0	0	1	0	2	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0017	1053	3	0	0	3	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0018	1059	3	0	0	3	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0019	1057	2	0	0	2	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0020	1045	2	2	0	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0021	1047	1	1	0	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0022	1051	1	0	0	1	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0023	1045	1	0	0	0	0	1	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0024	1049	1	0	0	1	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0025	1049	1	1	0	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0026	1055	1	0	1	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0027	1055	1	1	0	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0028	1059	1	0	0	0	0	1	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0029	1061	1	0	0	1	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	t0030	1047	1	1	0	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX7_chr1_52597371_52614051	0/0	t0001	666	195	34	26	102	8	25	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	1/1	t0002	666	128	30	25	53	6	12	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	0/0	t0003	666	35	24	3	2	2	4	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	0/0	t0004	665	7	5	2	0	0	0	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	0/0	t0005	665	5	5	0	0	0	0	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	0/0	t0006	666	1	0	0	1	0	0	copy fasta	GPX7	chr1	52597371	52614051