JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GPX7_chr1_52597371_52614051	0/0	t0007	666	1	0	0	0	0	1	copy fasta	GPX7	chr1	52597371	52614051
GPX8_chr5_55155171_55172297	1/1	t0001	3102	304	62	55	133	16	36	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0002	3102	59	6	4	42	0	7	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0003	3102	17	0	5	12	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0004	3102	5	5	0	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0005	3102	4	1	3	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0006	3102	4	4	0	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0007	3102	4	4	0	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0008	3102	2	2	0	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0009	3102	1	1	0	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0010	3102	1	0	0	1	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0011	3102	1	0	0	1	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0012	3102	1	0	0	1	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0013	3102	1	0	1	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0014	3102	1	1	0	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0015	3102	1	0	0	0	0	1	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0016	3102	1	0	0	1	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0017	3102	1	0	0	0	0	1	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0018	3102	1	0	0	0	0	1	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0019	3102	1	1	0	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0020	3102	1	1	0	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0021	3102	1	1	0	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0022	3102	1	1	0	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	t0023	3102	1	0	0	1	0	0	copy fasta	GPX8	chr5	55155171	55172297
GRAMD1A_chr19_34995323_35031469	0/1	t0001	490	326	70	53	150	13	39	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	t0002	490	8	8	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	1/0	t0003	485	6	2	3	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	t0004	495	5	0	4	0	0	1	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	t0005	490	5	0	4	0	0	1	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	t0006	501	4	0	4	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	t0007	485	2	2	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	t0008	505	1	1	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	t0009	495	1	0	0	0	1	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	t0010	490	1	0	0	0	0	1	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	t0011	490	1	1	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	t0012	490	1	0	0	1	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	t0013	490	1	0	0	1	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1B_chr11_123425269_123632767	0/0	t0001	5696	50	8	13	25	2	2	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0002	5698	15	2	1	11	1	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0003	5700	14	7	2	2	1	2	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0004	5689	13	0	1	4	0	8	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0005	5711	12	2	3	3	2	2	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0006	5689	10	0	2	7	1	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0007	5689	8	0	6	0	1	1	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0008	5689	6	6	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0009	5691	6	5	1	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0010	5709	5	0	2	3	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0011	5699	5	0	5	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0012	5702	5	1	1	2	0	1	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0013	5692	5	0	0	5	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767