Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMER3_chr2_130750540_130773134	0/0	t0031	3631	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0032	3631	1	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0033	3631	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0034	3631	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0035	3631	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0036	3631	1	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0037	3631	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0038	3632	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0039	3632	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0040	3632	1	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0041	3633	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0042	3633	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0043	3633	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0044	3631	1	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0045	3628	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0046	3632	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0047	3632	1	0	1	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0048	3631	1	0	0	0	0	1	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0049	3631	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0050	3631	1	1	0	0	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMER3_chr2_130750540_130773134	0/0	t0051	3631	1	0	0	1	0	0	copy fasta	AMER3	chr2	130750540	130773134
AMFR_chr16_56356452_56430545	0/0	t0001	1679	52	16	8	22	0	6	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	1/0	t0002	1676	47	1	8	26	1	10	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0003	1678	41	19	3	14	4	1	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/1	t0004	1680	38	11	7	14	0	5	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0005	1671	21	1	6	4	2	8	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0006	1667	15	13	0	2	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0007	1676	15	0	6	9	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0008	1677	12	0	1	9	1	1	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0009	1685	11	1	2	6	0	2	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0010	1685	9	0	0	6	0	3	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0011	1675	8	1	4	2	1	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0012	1685	8	8	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0013	1692	8	0	0	8	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0014	1673	4	4	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0015	1678	4	0	1	2	0	1	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0016	1679	4	1	1	2	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0017	1693	4	0	0	4	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0018	1677	3	0	1	2	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0019	1679	3	0	2	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0020	1684	3	0	0	3	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0021	1709	3	0	0	0	0	3	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0022	1677	2	0	0	1	1	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0023	1677	2	0	0	0	2	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0024	1676	2	0	2	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0025	1681	2	1	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0026	1689	2	2	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0027	1684	2	1	1	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0028	1679	2	0	0	2	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0029	1679	1	1	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545