JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRAMD1B_chr11_123425269_123632767	0/0	t0064	5695	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0065	5695	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0066	5693	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0067	5694	1	0	0	1	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0068	5689	1	0	0	1	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0069	5699	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0070	5699	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0071	5693	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0072	5689	1	0	1	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0073	5697	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0074	5689	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0075	5691	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0076	5691	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0077	5691	1	0	1	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0078	5698	1	0	0	0	0	1	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0079	5696	1	0	0	0	0	1	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0080	5706	1	0	0	1	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0081	5706	1	0	1	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0082	5704	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0083	5700	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0084	5696	1	0	0	1	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0085	5696	1	0	0	0	0	1	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0086	5690	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0087	5698	1	0	0	1	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0088	5696	1	0	1	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0089	5688	1	0	0	1	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0090	5706	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0091	5704	1	0	1	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0092	5700	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0093	5696	1	0	0	1	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0094	5697	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0095	5695	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0096	5699	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0097	5693	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1B_chr11_123425269_123632767	0/0	t0098	5696	1	1	0	0	0	0	copy fasta	GRAMD1B	chr11	123425269	123632767
GRAMD1C_chr3_113833788_113952174	1/1	t0001	1819	122	25	27	52	6	10	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0002	1819	61	15	10	20	6	10	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0003	1819	46	6	9	24	1	6	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0004	1819	23	1	4	13	1	4	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0005	1819	11	0	2	8	0	1	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0006	1819	8	8	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0007	1819	6	0	0	6	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0008	1819	5	5	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0009	1817	5	5	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0010	1814	5	4	1	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0011	1819	4	0	4	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0012	1822	4	4	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0013	1815	3	0	0	3	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0014	1819	3	3	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0015	1814	2	2	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174