JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRAMD1C_chr3_113833788_113952174	0/0	t0016	1814	2	2	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0017	1819	1	0	0	0	0	1	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0018	1819	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0019	1819	1	0	0	1	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0020	1833	1	0	0	1	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0021	1819	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0022	1819	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0023	1819	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0024	1817	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0025	1817	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0026	1819	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0027	1819	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0028	1819	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0029	1819	1	0	1	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD1C_chr3_113833788_113952174	0/0	t0030	1814	1	1	0	0	0	0	copy fasta	GRAMD1C	chr3	113833788	113952174
GRAMD2A_chr15_72154806_72202787	0/1	t0001	2219	316	70	55	159	8	23	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2A_chr15_72154806_72202787	1/0	t0002	2220	27	16	8	1	0	1	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2A_chr15_72154806_72202787	0/0	t0003	2218	10	2	1	7	0	0	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2A_chr15_72154806_72202787	0/0	t0004	2219	4	4	0	0	0	0	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2A_chr15_72154806_72202787	0/0	t0005	2219	3	3	0	0	0	0	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2A_chr15_72154806_72202787	0/0	t0006	2219	2	1	1	0	0	0	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2A_chr15_72154806_72202787	0/0	t0007	2219	1	0	1	0	0	0	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2A_chr15_72154806_72202787	0/0	t0008	2237	1	0	0	1	0	0	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2A_chr15_72154806_72202787	0/0	t0009	2219	1	0	0	1	0	0	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2A_chr15_72154806_72202787	0/0	t0010	2219	1	0	0	1	0	0	copy fasta	GRAMD2A	chr15	72154806	72202787
GRAMD2B_chr5_126418409_126499364	0/1	t0001	1607	187	38	23	94	9	22	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	1/0	t0002	1607	56	12	23	9	5	6	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0003	1608	51	16	17	10	4	4	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0004	1607	11	10	1	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0005	1607	8	4	3	0	0	1	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0006	1607	4	4	0	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0007	1608	3	3	0	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0008	1607	2	2	0	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0009	1608	2	0	2	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0010	1607	2	0	0	2	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0011	1607	1	1	0	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0012	1607	1	0	1	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0013	1607	1	0	1	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0014	1607	1	0	0	0	0	1	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0015	1607	1	1	0	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0016	1607	1	0	1	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0017	1607	1	1	0	0	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD2B_chr5_126418409_126499364	0/0	t0018	1575	1	0	0	1	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD4_chr22_46615386_46684785	0/0	t0001	2764	78	0	14	56	0	8	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0002	2764	52	1	16	25	6	4	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/1	t0003	2764	43	13	12	4	5	8	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0004	2764	25	15	5	2	0	3	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0005	2764	16	6	2	0	1	7	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0006	2764	14	0	0	14	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0007	2763	9	7	2	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785