JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRAMD4_chr22_46615386_46684785	0/0	t0008	2765	9	9	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0009	2764	6	1	3	0	0	2	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0010	2764	4	4	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0011	2765	3	3	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0012	2763	3	0	0	2	0	1	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0013	2763	2	1	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0014	2764	2	1	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0015	2764	2	2	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	1/0	t0016	2764	2	0	0	0	0	1	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0017	2764	2	1	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0018	2763	2	1	0	0	1	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0019	2763	2	2	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0020	2764	2	1	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0021	2764	2	0	0	2	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0022	2764	2	0	0	2	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0023	2764	2	0	2	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0024	2764	2	0	2	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0025	2764	2	1	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0026	2764	2	0	0	2	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0027	2764	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0028	2764	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0029	2764	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0030	2765	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0031	2764	1	0	0	0	0	1	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0032	2764	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0033	2763	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0034	2763	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0035	2763	1	0	0	0	0	1	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0036	2763	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0037	2764	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0038	2764	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0039	2764	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0040	2764	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0041	2765	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0042	2764	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0043	2764	1	0	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0044	2764	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0045	2764	1	0	0	0	0	1	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0046	2764	1	0	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0047	2764	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0048	2764	1	0	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0049	2764	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0050	2764	1	0	0	0	0	1	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0051	2764	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0052	2764	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0053	2764	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0054	2764	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0055	2765	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0056	2764	1	0	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0057	2764	1	0	0	0	1	0	copy fasta	GRAMD4	chr22	46615386	46684785