JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRAMD4_chr22_46615386_46684785	0/0	t0058	2764	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0059	2764	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0060	2764	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0061	2764	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0062	2764	1	0	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0063	2764	1	0	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	t0064	2764	1	0	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAP2_chr22_39896084_39978721	0/1	t0001	2899	174	43	51	46	11	22	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	1/0	t0002	2899	91	5	22	46	4	13	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0003	2899	6	5	1	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0004	2899	6	5	1	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0005	2899	4	4	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0006	2899	4	3	1	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0007	2899	4	4	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0008	2899	3	0	0	0	0	3	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0009	2899	3	2	0	1	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0010	2899	3	0	0	3	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0011	2899	2	0	0	0	0	2	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0012	2899	2	0	0	2	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0013	2899	2	2	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0014	2899	1	1	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0015	2899	1	1	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0016	2899	1	0	1	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0017	2899	1	1	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0018	2899	1	1	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0019	2899	1	1	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0020	2899	1	0	0	1	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0021	2899	1	0	0	0	1	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0022	2900	1	0	0	1	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0023	2899	1	0	1	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0024	2899	1	1	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	t0025	2899	1	1	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAPL_chr17_19122589_19164187	1/1	t0001	843	34	8	11	1	7	5	copy fasta	GRAPL	chr17	19122589	19164187
GRAPL_chr17_19122589_19164187	0/0	t0002	846	26	14	3	5	1	3	copy fasta	GRAPL	chr17	19122589	19164187
GRAPL_chr17_19122589_19164187	0/0	t0003	843	7	1	2	0	0	4	copy fasta	GRAPL	chr17	19122589	19164187
GRAPL_chr17_19122589_19164187	0/0	t0004	846	2	1	0	0	0	1	copy fasta	GRAPL	chr17	19122589	19164187
GRAPL_chr17_19122589_19164187	0/0	t0005	846	2	2	0	0	0	0	copy fasta	GRAPL	chr17	19122589	19164187
GRAPL_chr17_19122589_19164187	0/0	t0006	846	1	0	0	0	0	1	copy fasta	GRAPL	chr17	19122589	19164187
GRAPL_chr17_19122589_19164187	0/0	t0007	843	1	0	0	1	0	0	copy fasta	GRAPL	chr17	19122589	19164187
GRAPL_chr17_19122589_19164187	0/0	t0008	843	1	0	0	1	0	0	copy fasta	GRAPL	chr17	19122589	19164187
GRAP_chr17_19015656_19051957	1/0	t0001	1335	129	39	19	56	2	12	copy fasta	GRAP	chr17	19015656	19051957
GRAP_chr17_19015656_19051957	0/1	t0002	1335	116	7	30	48	12	18	copy fasta	GRAP	chr17	19015656	19051957
GRAP_chr17_19015656_19051957	0/0	t0003	1335	12	10	2	0	0	0	copy fasta	GRAP	chr17	19015656	19051957
GRAP_chr17_19015656_19051957	0/0	t0004	1335	1	0	0	1	0	0	copy fasta	GRAP	chr17	19015656	19051957
GRAP_chr17_19015656_19051957	0/0	t0005	1335	1	0	0	1	0	0	copy fasta	GRAP	chr17	19015656	19051957
GRAP_chr17_19015656_19051957	0/0	t0006	1335	1	0	1	0	0	0	copy fasta	GRAP	chr17	19015656	19051957
GRB10_chr7_50585068_50787896	0/0	t0001	3684	172	31	26	85	9	21	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0002	3684	33	13	8	9	0	3	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0003	3684	9	1	2	3	2	1	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0004	3684	8	7	1	0	0	0	copy fasta	GRB10	chr7	50585068	50787896