JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRB10_chr7_50585068_50787896	0/0	t0005	3684	7	6	1	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0006	3684	7	0	4	3	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0007	3684	4	0	2	1	0	1	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0008	3684	4	0	3	1	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0009	3684	3	3	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0010	3684	3	3	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0011	3684	3	1	2	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0012	3684	3	3	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0013	3684	2	2	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0014	3684	2	2	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0015	3684	2	0	2	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0016	3684	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	1/0	t0017	3684	1	0	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0018	3684	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0019	3684	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0020	3684	1	0	0	1	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0021	3684	1	0	0	0	1	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0022	3684	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0023	3684	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0024	3684	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0025	3684	1	0	0	1	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0026	3684	1	0	1	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0027	3684	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0028	3684	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0029	3684	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	t0030	3684	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/1	t0031	3684	1	0	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB14_chr2_164487417_164626482	1/1	t0001	793	93	42	10	33	1	5	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0002	790	68	0	19	34	4	11	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0003	793	48	5	10	24	1	8	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0004	790	29	11	4	9	2	3	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0005	793	18	3	9	0	3	3	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0006	793	14	7	2	4	1	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0007	793	9	7	1	1	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0008	793	5	2	2	0	0	1	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0009	790	3	3	0	0	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0010	790	3	0	2	1	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0011	790	2	1	1	0	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0012	793	1	0	0	0	0	1	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	t0013	790	1	1	0	0	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB2_chr17_75313076_75410678	0/0	t0001	2620	84	11	21	33	5	14	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	1/0	t0002	2620	34	5	12	12	0	4	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0003	2622	27	9	7	4	3	4	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0004	2623	21	10	6	1	1	3	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0005	2620	14	11	3	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0006	2621	12	11	0	1	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0007	2619	9	9	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0008	2624	5	5	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0009	2621	4	1	0	1	0	2	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/1	t0010	2621	3	0	0	0	2	0	copy fasta	GRB2	chr17	75313076	75410678