JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRB2_chr17_75313076_75410678	0/0	t0011	2619	3	1	1	0	1	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0012	2621	3	0	0	0	0	3	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0013	2622	2	2	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0014	2623	2	2	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0015	2623	2	1	0	0	0	1	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0016	2622	2	1	1	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0017	2619	2	2	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0018	2619	1	1	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0019	2619	1	1	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0020	2621	1	0	0	1	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0021	2622	1	0	0	0	0	1	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0022	2619	1	0	0	1	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0023	2620	1	0	0	0	0	1	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0024	2624	1	0	0	1	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0025	2621	1	0	1	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0026	2622	1	0	0	0	0	1	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0027	2623	1	0	1	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0028	2620	1	1	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0029	2622	1	1	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0030	2621	1	1	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0031	2619	1	0	1	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0032	2619	1	1	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0033	2623	1	1	0	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	t0034	2620	1	0	0	1	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB7_chr17_39732938_39752285	0/1	t0001	635	347	54	78	160	16	38	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	t0002	634	9	9	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	t0003	635	7	7	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	t0004	635	5	5	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	t0005	635	5	5	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	t0006	635	3	3	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	t0007	635	3	3	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	t0008	635	3	3	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	1/0	t0009	635	2	1	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	t0010	634	1	1	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	t0011	635	1	1	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GREB1L_chr18_21237232_21531112	0/0	t0001	3579	58	32	8	14	1	3	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/1	t0002	3592	29	7	8	9	2	2	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0003	3594	19	3	3	8	2	3	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	1/0	t0004	3573	13	12	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0005	3589	5	5	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0006	3573	3	1	2	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0007	3583	2	2	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0008	3583	2	2	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0009	3573	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0010	3594	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0011	3591	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0012	3599	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0013	3589	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0014	3597	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0015	3566	1	0	0	1	0	0	copy fasta	GREB1L	chr18	21237232	21531112