JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GREB1L_chr18_21237232_21531112	0/0	t0016	3592	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0017	3596	1	0	0	0	1	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0018	3587	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0019	3592	1	0	0	1	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0020	3579	1	0	0	1	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0021	3579	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0022	3579	1	0	1	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0023	3579	1	0	0	1	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0024	3579	1	0	0	1	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	t0025	3587	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1_chr2_11529045_11647788	0/0	t0001	2721	42	8	8	21	1	4	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/1	t0002	2721	42	0	16	17	0	8	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0003	2716	26	6	1	16	2	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0004	2716	17	2	3	9	0	3	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0005	2708	14	0	4	10	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0006	2726	12	0	3	7	0	2	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0007	2726	11	0	0	11	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0008	2706	10	1	3	5	1	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0009	2706	8	0	2	3	1	2	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0010	2710	7	1	3	0	2	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0011	2708	7	0	0	3	0	4	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0012	2716	6	5	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0013	2710	6	0	3	0	0	3	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0014	2707	5	4	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0015	2716	5	5	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0016	2706	5	1	0	3	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0017	2721	4	4	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0018	2706	4	0	2	0	0	2	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0019	2721	3	3	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0020	2716	3	3	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0021	2716	3	3	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0022	2711	3	2	0	0	1	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0023	2716	3	2	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0024	2721	3	3	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0025	2706	3	0	2	0	1	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0026	2708	2	0	0	2	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0027	2716	2	2	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0028	2721	2	2	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	1/0	t0029	2706	2	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0030	2708	2	0	0	2	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0031	2716	2	2	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0032	2731	2	0	0	2	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0033	2716	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0034	2711	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0035	2716	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0036	2706	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0037	2721	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0038	2711	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0039	2721	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0040	2711	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788