JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GREB1_chr2_11529045_11647788	0/0	t0041	2706	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0042	2706	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0043	2710	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0044	2721	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0045	2710	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0046	2721	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0047	2725	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0048	2715	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0049	2715	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0050	2710	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0051	2731	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0052	2721	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0053	2722	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0054	2711	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0055	2706	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0056	2706	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0057	2726	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0058	2710	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0059	2706	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0060	2721	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0061	2711	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0062	2720	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0063	2710	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0064	2726	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0065	2721	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0066	2706	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0067	2708	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0068	2706	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0069	2720	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0070	2716	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0071	2711	1	0	0	0	1	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0072	2708	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0073	2708	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	t0074	2706	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREM1_chr15_32713004_32750106	0/0	t0001	14018	16	0	0	15	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0002	14024	11	0	1	10	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0003	14025	10	0	0	9	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0004	14038	9	0	0	5	0	4	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0005	14019	8	0	0	8	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0006	14032	7	0	6	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0007	14026	6	0	6	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0008	14027	5	0	3	2	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0009	14038	5	0	0	5	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0010	14026	5	0	1	4	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0011	14032	4	1	1	2	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0012	14007	4	4	0	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0013	14038	4	0	0	4	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0014	14025	4	0	0	4	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0015	14024	4	0	0	4	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0016	14023	4	0	0	3	0	1	copy fasta	GREM1	chr15	32713004	32750106