JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
GREM1_chr15_32713004_32750106	0/0	t0117	14005	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0118	14027	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0119	14032	1	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0120	14023	1	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0121	14026	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0122	14025	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0123	14005	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0124	14023	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0125	14018	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0126	14036	1	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0127	14034	1	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0128	14032	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0129	14026	1	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0130	14008	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0131	14025	1	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0132	14026	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0133	14025	1	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0134	14006	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0135	14027	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0136	14026	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0137	14025	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0138	14024	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0139	14023	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0140	14025	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0141	14036	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0142	13995	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0143	14030	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0144	14027	1	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0145	14025	1	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0146	14024	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0147	14024	1	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0148	14023	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0149	14022	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0150	14039	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0151	14037	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0152	14020	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0153	14017	1	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0154	14039	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0155	14039	1	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0156	14038	1	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0157	14038	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0158	14038	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0159	14038	1	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0160	14038	1	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0161	14017	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0162	14008	1	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0163	14013	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0164	14026	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0165	14025	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0166	14025	1	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106