JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GREM1_chr15_32713004_32750106	0/0	t0217	14010	1	1	0	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0218	14037	1	0	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0219	14031	1	0	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0220	14021	1	1	0	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0221	14019	1	1	0	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0222	14023	1	1	0	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0223	14018	1	1	0	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0224	14015	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0225	14040	1	0	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0226	14032	1	0	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0227	14030	1	0	0	0	1	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0228	14026	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0229	14026	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0230	14026	1	0	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0231	14024	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0232	14027	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0233	14026	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0234	14026	1	0	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0235	14024	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0236	14024	1	0	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0237	14024	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0238	14024	1	0	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0239	14023	1	0	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0240	14026	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0241	14024	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0242	14019	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0243	14026	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0244	14038	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0245	14038	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0246	14038	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0247	14024	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0248	14023	1	0	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0249	14015	1	0	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0250	14026	1	0	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0251	14026	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0252	14024	1	0	0	0	0	1	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0253	14032	1	0	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0254	14027	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	t0255	14025	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM2_chr1_240484573_240617155	0/0	t0001	3669	86	6	8	58	2	12	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0002	3669	75	3	14	44	4	10	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0003	3669	46	15	6	19	3	3	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0004	3669	17	3	4	7	1	2	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0005	3669	17	15	1	0	0	1	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0006	3669	15	1	5	6	0	3	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0007	3669	14	0	3	11	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0008	3669	13	10	2	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0009	3669	10	8	2	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0010	3669	9	4	0	4	1	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0011	3669	8	2	4	0	2	0	copy fasta	GREM2	chr1	240484573	240617155