JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GREM2_chr1_240484573_240617155	0/0	t0012	3669	7	0	1	4	0	2	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0013	3669	4	0	0	4	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0014	3669	4	0	0	4	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0015	3669	3	0	0	3	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0016	3669	2	0	0	2	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0017	3669	2	0	0	2	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0018	3669	2	0	0	0	0	2	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0019	3669	2	2	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0020	3669	2	2	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0021	3669	2	2	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0022	3669	2	1	0	0	1	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0023	3669	2	2	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0024	3669	1	0	0	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0025	3669	1	0	0	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0026	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0027	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0028	3669	1	0	1	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0029	3669	1	0	1	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0030	3669	1	0	0	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0031	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0032	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0033	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0034	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0035	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0036	3669	1	0	1	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0037	3669	1	0	0	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0038	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0039	3669	1	0	0	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0040	3669	1	0	0	0	0	1	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0041	3669	1	0	0	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0042	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0043	3669	1	0	0	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0044	3669	1	0	0	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0045	3669	1	0	0	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0046	3669	1	0	0	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0047	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0048	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0049	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0050	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0051	3669	1	1	0	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0052	3669	1	0	0	0	0	1	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0053	3669	1	0	1	0	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0054	3669	1	0	0	1	0	0	copy fasta	GREM2	chr1	240484573	240617155
GREM2_chr1_240484573_240617155	0/0	t0055	3669	1	0	0	0	0	1	copy fasta	GREM2	chr1	240484573	240617155
GRHL1_chr2_9946693_10007277	1/1	t0001	1712	206	29	36	109	5	25	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0002	1712	154	31	32	74	8	9	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0003	1712	13	11	2	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0004	1711	8	2	4	0	0	2	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0005	1712	6	4	2	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0006	1712	4	4	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277