JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRHL1_chr2_9946693_10007277	0/0	t0007	1712	4	4	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0008	1712	4	3	1	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0009	1712	3	0	1	0	1	1	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0010	1712	3	0	0	2	0	1	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0011	1712	2	2	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0012	1712	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0013	1712	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0014	1712	1	0	1	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0015	1712	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0016	1712	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0017	1712	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0018	1712	1	0	1	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0019	1712	1	0	0	1	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0020	1712	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0021	1712	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	t0022	1712	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL2_chr8_101487439_101674726	0/1	t0001	3367	52	16	8	19	0	8	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0002	3368	50	2	8	34	4	2	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0003	3370	25	0	5	15	0	5	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0004	3368	19	10	0	8	0	1	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0005	3355	18	6	0	12	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0006	3369	13	4	2	3	2	2	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0007	3367	10	5	3	0	1	1	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0008	3368	9	9	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0009	3371	8	0	0	8	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0010	3368	7	0	0	6	0	1	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0011	3367	7	7	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0012	3369	6	0	2	2	0	2	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0013	3369	4	4	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0014	3366	4	2	0	2	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0015	3367	3	0	2	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0016	3369	3	0	0	3	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0017	3367	3	0	2	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0018	3369	3	0	0	3	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0019	3355	3	1	1	0	0	1	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0020	3368	3	0	0	3	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0021	3369	2	0	0	2	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0022	3356	2	1	1	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0023	3370	2	0	0	0	2	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0024	3368	2	0	0	2	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0025	3365	2	0	1	0	1	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0026	3368	2	0	2	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0027	3368	2	2	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0028	3367	2	2	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0029	3369	2	1	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0030	3355	2	2	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0031	3369	2	1	1	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0032	3368	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0033	3369	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0034	3367	1	0	0	0	0	1	copy fasta	GRHL2	chr8	101487439	101674726