JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRHL2_chr8_101487439_101674726	0/0	t0035	3371	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0036	3367	1	0	0	0	0	1	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	1/0	t0037	3355	1	0	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0038	3368	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0039	3355	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0040	3369	1	0	0	0	0	1	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0041	3370	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0042	3368	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0043	3369	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0044	3367	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0045	3366	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0046	3369	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0047	3368	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0048	3365	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0049	3367	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0050	3355	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0051	3369	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0052	3367	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0053	3368	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0054	3370	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0055	3367	1	0	1	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0056	3369	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0057	3368	1	0	1	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0058	3367	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0059	3369	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0060	3355	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0061	3368	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0062	3369	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0063	3359	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0064	3368	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	t0065	3367	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL3_chr1_24314357_24360318	1/1	t0001	1026	272	37	43	143	11	36	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0002	1026	85	50	19	3	3	10	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0003	1026	3	2	1	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0004	1026	2	2	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0005	1026	2	2	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0006	1026	1	0	1	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0007	1026	1	0	0	0	0	1	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0008	1026	1	0	0	0	0	1	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0009	1026	1	1	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0010	1026	1	1	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0011	1026	1	1	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0012	1026	1	0	0	1	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	t0013	1026	1	0	0	1	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHPR_chr9_37417696_37441990	1/0	t0001	264	382	90	71	167	11	42	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/1	t0002	264	17	2	1	9	3	1	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	t0003	264	2	2	0	0	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	t0004	264	1	0	0	0	0	1	copy fasta	GRHPR	chr9	37417696	37441990
GRIA1_chr5_153485670_153818869	1/0	t0001	2864	162	57	39	26	9	30	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/1	t0002	2864	11	5	3	0	0	2	copy fasta	GRIA1	chr5	153485670	153818869