JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIA1_chr5_153485670_153818869	0/0	t0003	2864	3	3	0	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0004	2864	3	3	0	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0005	2864	3	2	1	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0006	2864	2	2	0	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0007	2864	1	1	0	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0008	2864	1	0	1	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0009	2864	1	1	0	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0010	2864	1	0	0	0	0	1	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0011	2864	1	1	0	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0012	2864	1	0	1	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0013	2864	1	1	0	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0014	2864	1	0	0	0	1	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0015	2864	1	0	1	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	t0016	2864	1	0	0	0	0	1	copy fasta	GRIA1	chr5	153485670	153818869
GRIA2_chr4_157215728_157371075	0/0	t0001	2960	81	51	14	11	2	3	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0002	2960	64	3	14	33	2	12	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0003	2960	32	1	0	30	0	1	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0004	2960	24	6	7	4	6	1	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0005	2962	5	2	0	0	0	3	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0006	2960	2	0	0	2	0	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0007	2960	1	1	0	0	0	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0008	2960	1	1	0	0	0	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0009	2962	1	0	0	1	0	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0010	2960	1	1	0	0	0	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0011	2960	1	1	0	0	0	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0012	2960	1	0	1	0	0	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0013	2960	1	1	0	0	0	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	t0014	2960	1	0	0	1	0	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA3_chrX_123179278_123495915	0/1	t0001	2466	84	11	15	39	2	16	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	1/0	t0002	2464	30	21	5	1	1	1	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0003	2460	21	2	4	11	0	4	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0004	2466	15	2	3	10	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0005	2468	13	8	3	0	1	1	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0006	2468	10	0	4	6	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0007	2470	5	5	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0008	2464	4	4	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0009	2462	4	0	2	0	1	1	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0010	2468	3	0	0	3	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0011	2472	3	3	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0012	2462	2	2	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0013	2466	2	2	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0014	2484	1	1	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0015	2482	1	1	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0016	2470	1	0	1	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0017	2470	1	0	0	1	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0018	2466	1	0	0	1	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0019	2466	1	0	0	1	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0020	2464	1	1	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0021	2464	1	1	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0022	2460	1	0	1	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915