JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIA3_chrX_123179278_123495915	0/0	t0023	2458	1	0	0	0	0	1	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	t0024	2467	1	0	0	1	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA4_chr11_105605073_105987090	0/0	t0001	2805	42	14	5	19	1	3	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/1	t0002	2804	19	4	5	7	1	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0003	2806	15	4	1	10	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0004	2807	12	0	8	4	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0005	2796	7	2	0	5	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0006	2806	6	6	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0007	2810	6	2	1	1	1	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0008	2792	5	5	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0009	2808	5	5	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0010	2807	4	0	0	3	1	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0011	2811	4	0	0	4	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0012	2804	4	2	0	1	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0013	2809	3	1	0	2	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0014	2804	2	2	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0015	2801	2	0	0	1	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0016	2803	2	2	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0017	2809	2	1	0	1	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0018	2811	2	1	1	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0019	2808	2	2	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0020	2810	2	2	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0021	2802	2	2	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0022	2800	2	0	1	0	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0023	2816	2	2	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0024	2804	2	2	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0025	2799	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0026	2805	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0027	2805	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0028	2812	1	0	0	1	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0029	2801	1	0	0	1	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0030	2803	1	0	0	0	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0031	2813	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0032	2795	1	0	1	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0033	2803	1	0	0	0	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0034	2807	1	0	0	0	1	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0035	2811	1	0	1	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0036	2813	1	0	0	1	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0037	2817	1	0	0	0	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	1/0	t0038	2798	1	0	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0039	2802	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0040	2808	1	0	1	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0041	2812	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0042	2798	1	0	0	0	1	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0043	2804	1	0	0	0	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0044	2796	1	0	0	1	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0045	2798	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0046	2802	1	0	0	0	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0047	2802	1	0	0	0	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0048	2803	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090