JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIA4_chr11_105605073_105987090	0/0	t0049	2805	1	0	1	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0050	2807	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0051	2811	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0052	2804	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0053	2810	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	t0054	2814	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRID1_chr10_85594552_86371795	0/0	t0001	3125	9	1	3	0	0	5	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0002	3125	8	1	2	3	0	2	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0003	3139	7	7	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0004	3144	4	3	1	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0005	3129	3	2	1	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0006	3129	3	3	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0007	3154	3	0	3	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0008	3143	2	2	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0009	3125	2	0	2	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0010	3152	2	2	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0011	3151	2	2	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0012	3137	2	0	0	1	1	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0013	3129	2	0	1	0	0	1	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0014	3169	2	2	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0015	3165	2	1	1	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0016	3174	2	0	0	0	0	2	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0017	3149	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0018	3139	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0019	3142	1	0	0	0	1	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0020	3178	1	0	0	1	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0021	3168	1	0	0	1	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0022	3170	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0023	3162	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0024	3125	1	0	0	1	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0025	3129	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0026	3151	1	0	1	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0027	3153	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0028	3160	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0029	3151	1	0	1	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0030	3169	1	0	0	1	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0031	3159	1	0	0	0	0	1	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0032	3160	1	0	0	0	0	1	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0033	3152	1	0	1	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0034	3150	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0035	3182	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0036	3166	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0037	3164	1	0	0	0	0	1	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0038	3133	1	0	0	1	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0039	3153	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0040	3143	1	0	1	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0041	3143	1	0	1	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0042	3139	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0043	3137	1	0	0	1	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0044	3141	1	0	0	1	0	0	copy fasta	GRID1	chr10	85594552	86371795