JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRID1_chr10_85594552_86371795	0/0	t0045	3131	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0046	3177	1	0	0	0	1	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0047	3177	1	0	0	1	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0048	3171	1	0	0	0	0	1	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0049	3172	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0050	3167	1	0	0	0	0	1	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0051	3168	1	0	0	0	1	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0052	3169	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0053	3166	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0054	3152	1	0	1	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0055	3153	1	0	0	0	0	1	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0056	3131	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	t0057	3139	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID2IP_chr7_6491778_6556461	1/1	t0001	1022	279	72	55	108	12	30	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0002	1022	49	4	2	32	2	9	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0003	1022	20	5	9	1	3	2	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0004	1022	3	3	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0005	1022	3	2	1	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0006	1022	2	0	0	2	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0007	1022	1	0	0	0	1	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0008	1022	1	0	0	0	0	1	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0009	1022	1	0	0	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0010	1022	1	0	1	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0011	1022	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0012	1022	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0013	1022	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0014	1022	1	0	0	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0015	1022	1	0	0	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	t0016	1022	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2_chr4_92298966_93779566	0/0	t0001	2760	27	17	5	3	0	2	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	t0002	2760	2	2	0	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	t0003	2760	1	1	0	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	t0004	2760	1	0	1	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	t0005	2760	1	1	0	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	t0006	2760	1	0	0	1	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	t0007	2760	1	1	0	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRIFIN_chr7_2469728_2481398	1/1	t0001	158	376	94	69	152	16	43	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	t0002	158	4	0	3	0	0	1	copy fasta	GRIFIN	chr7	2469728	2481398
GRIK1_chr21_29531933_29944996	0/0	t0001	794	151	70	27	44	4	6	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	t0002	794	5	4	1	0	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	t0003	794	4	0	0	4	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	t0004	794	2	2	0	0	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK2_chr6_101388708_102075083	0/0	t0001	1996	37	8	5	13	0	11	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0002	1993	26	21	1	3	0	1	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0003	1999	17	3	1	10	0	3	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0004	1990	14	10	2	2	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0005	1990	4	0	0	4	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0006	1996	2	0	1	1	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0007	1987	2	1	0	1	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0008	1993	2	0	0	2	0	0	copy fasta	GRIK2	chr6	101388708	102075083