Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMIGO1_chr1_109499178_109514727	0/0	t0017	3649	1	0	0	1	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0018	3649	1	0	0	0	0	1	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0019	3649	1	0	1	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0020	3649	1	0	0	1	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0021	3649	1	1	0	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0022	3649	1	1	0	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0023	3649	1	1	0	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0024	3649	1	1	0	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0025	3649	1	1	0	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0026	3649	1	0	1	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0027	3649	1	0	1	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0028	3649	1	0	0	1	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0029	3649	1	0	0	1	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0030	3649	1	0	0	0	0	1	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0031	3649	1	1	0	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO2_chr12_47071447_47084959	0/0	t0001	1656	185	34	37	91	5	18	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/1	t0002	1656	102	20	25	40	8	8	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0003	1656	73	4	2	60	4	3	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0004	1654	56	4	2	34	1	15	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0005	1656	21	7	3	11	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0006	1656	7	5	2	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0007	1656	6	4	2	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0008	1656	6	6	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0009	1654	6	6	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0010	1656	3	3	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0011	1654	2	0	2	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0012	1656	2	0	0	1	0	1	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0013	1637	2	2	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	1/0	t0014	1656	2	0	0	0	0	1	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0015	1656	1	0	1	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0016	1656	1	1	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0017	1656	1	1	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0018	1656	1	1	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0019	1654	1	1	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0020	1654	1	1	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	t0021	1656	1	0	0	1	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO3_chr3_49711829_49724684	0/1	t0001	1342	271	54	57	116	13	30	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	1/0	t0002	1342	49	32	10	1	3	2	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	t0003	1342	6	0	0	6	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	t0004	1342	2	1	1	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	t0005	1342	1	0	0	1	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	t0006	1342	1	1	0	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	t0007	1342	1	0	0	0	1	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	t0008	1342	1	0	0	0	1	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	t0009	1342	1	1	0	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	t0010	1342	1	1	0	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMMECR1L_chr2_127856630_127890956	0/1	t0001	3760	91	2	27	53	2	6	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0002	3761	84	3	21	38	6	16	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0003	3755	64	27	7	22	0	8	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	1/0	t0004	3760	29	18	4	1	3	2	copy fasta	AMMECR1L	chr2	127856630	127890956