JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIK2_chr6_101388708_102075083	0/0	t0009	2002	2	0	1	0	0	1	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0010	1996	1	0	0	1	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0011	1998	1	0	1	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0012	1993	1	0	1	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0013	1999	1	0	0	1	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0014	1984	1	1	0	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0015	1989	1	1	0	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0016	1992	1	1	0	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0017	1998	1	0	1	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0018	1990	1	1	0	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	t0019	1993	1	1	0	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK3_chr1_36790527_37039515	1/1	t0001	6732	69	39	13	4	4	7	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0002	6732	7	6	1	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0003	6732	5	4	1	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0004	6732	3	3	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0005	6735	3	3	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0006	6732	2	2	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0007	6732	2	2	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0008	6734	2	1	1	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0009	6734	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0010	6734	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0011	6732	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0012	6732	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0013	6734	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0014	6732	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0015	6732	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0016	6732	1	0	0	1	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0017	6734	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0018	6732	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0019	6732	1	0	0	1	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0020	6732	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0021	6732	1	0	0	0	0	1	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0022	6732	1	0	1	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0023	6732	1	0	0	0	0	1	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0024	6737	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0025	6732	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0026	6732	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0027	6734	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0028	6732	1	0	1	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	t0029	6734	1	0	0	0	0	1	copy fasta	GRIK3	chr1	36790527	37039515
GRIK4_chr11_120506748_120993906	0/0	t0001	2941	28	9	3	10	2	4	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	1/0	t0002	2945	22	19	2	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0003	2941	17	2	3	7	0	5	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0004	2945	15	1	2	7	1	4	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0005	2941	6	4	0	1	0	1	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0006	2939	6	6	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0007	2942	6	6	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0008	2945	3	3	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0009	2931	3	1	2	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/1	t0010	2945	2	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906