JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIK4_chr11_120506748_120993906	0/0	t0011	2942	2	2	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0012	2946	2	1	1	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0013	2945	2	0	0	2	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0014	2939	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0015	2942	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0016	2941	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0017	2932	1	0	0	0	1	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0018	2931	1	0	1	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0019	2970	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0020	2942	1	0	0	1	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0021	2945	1	0	0	0	0	1	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0022	2945	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0023	2941	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0024	2945	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0025	2945	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0026	2941	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	t0027	2941	1	0	0	0	0	1	copy fasta	GRIK4	chr11	120506748	120993906
GRIK5_chr19_41993324_42075206	1/1	t0001	1564	163	40	26	59	4	32	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	t0002	1564	2	2	0	0	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	t0003	1551	1	1	0	0	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	t0004	1564	1	0	0	0	0	1	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	t0005	1564	1	0	0	1	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	t0006	1564	1	1	0	0	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	t0007	1564	1	0	0	0	0	1	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	t0008	1564	1	1	0	0	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	t0009	1564	1	1	0	0	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIN1_chr9_137134154_137173756	1/1	t0001	1563	294	92	62	81	15	42	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/0	t0002	1563	2	2	0	0	0	0	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/0	t0003	1563	1	0	0	0	1	0	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/0	t0004	1563	1	0	0	1	0	0	copy fasta	GRIN1	chr9	137134154	137173756
GRIN2A_chr16_9748408_10187428	0/0	t0001	10316	24	12	9	2	1	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0002	10314	20	7	8	4	1	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/1	t0003	10313	14	6	1	5	0	1	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0004	10315	5	4	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0005	10315	5	1	1	0	0	3	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0006	10317	5	1	2	0	0	2	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0007	10316	4	0	1	0	2	1	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0008	10316	4	4	0	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0009	10317	4	2	2	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0010	10315	3	0	0	3	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0011	10314	3	2	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0012	10313	3	0	0	0	1	2	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0013	10313	3	0	3	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0014	10317	2	2	0	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0015	10314	2	2	0	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0016	10314	2	0	0	2	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0017	10313	2	0	0	2	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0018	10316	2	2	0	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	1/0	t0019	10312	2	0	0	0	1	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0020	10312	2	2	0	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428