JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
GRIN2A_chr16_9748408_10187428	0/0	t0021	10310	2	2	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0022	10310	2	2	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0023	10317	2	0	0	2	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0024	10316	2	2	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0025	10316	2	0	2	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0026	10316	2	0	0	2	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0027	10314	1	0	0	0	1	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0028	10316	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0029	10316	1	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0030	10315	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0031	10314	1	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0032	10314	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0033	10313	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0034	10317	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0035	10317	1	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0036	10315	1	0	0	0	1	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0037	10315	1	0	0	0	1	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0038	10314	1	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0039	10314	1	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0040	10314	1	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0041	10314	1	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0042	10314	1	0	0	1	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0043	10313	1	0	0	1	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0044	10314	1	0	0	1	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0045	10314	1	0	0	1	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0046	10313	1	0	0	1	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0047	10316	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0048	10315	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0049	10315	1	0	0	1	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0050	10314	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0051	10313	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0052	10313	1	0	0	1	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0053	10313	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0054	10312	1	0	0	1	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0055	10314	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0056	10312	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0057	10312	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0058	10313	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0059	10318	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0060	10316	1	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0061	10316	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0062	10316	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0063	10315	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0064	10315	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0065	10314	1	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0066	10313	1	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0067	10315	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0068	10316	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0069	10317	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	t0070	10317	1	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428