JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIN2A_chr16_9748408_10187428	0/0	t0071	10314	1	0	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2B_chr12_13532337_13986602	0/0	t0001	26150	10	1	6	0	1	2	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0002	26156	5	3	2	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0003	26150	4	0	1	0	3	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0004	26156	4	4	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0005	26147	3	0	1	0	2	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0006	26150	3	0	2	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0007	26178	3	1	1	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0008	26150	3	3	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0009	26151	3	3	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0010	26148	2	0	0	2	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0011	26163	2	2	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0012	26156	2	2	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0013	26156	2	1	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0014	26159	2	2	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0015	26155	2	2	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0016	26159	2	2	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0017	26144	2	0	0	2	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0018	26145	2	0	0	2	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0019	26146	2	0	0	1	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0020	26180	2	0	2	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0021	26179	2	1	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0022	26145	2	1	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0023	26146	2	0	0	2	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0024	26145	2	0	0	1	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0025	26156	2	2	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0026	26149	2	2	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0027	26147	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0028	26150	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0029	26148	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0030	26148	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0031	26147	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0032	26148	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0033	26178	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0034	26156	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0035	26158	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0036	26150	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0037	26148	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0038	26150	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0039	26149	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0040	26150	1	0	0	0	1	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0041	26150	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0042	26150	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0043	26146	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0044	26146	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0045	26184	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0046	26179	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0047	26151	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0048	26153	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0049	26179	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602