JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIN2B_chr12_13532337_13986602	0/0	t0050	26181	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	1/0	t0051	26155	1	0	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0052	26158	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0053	26154	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0054	26156	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0055	26155	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0056	26156	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0057	26158	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0058	26155	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0059	26155	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0060	26155	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0061	26155	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0062	26157	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0063	26156	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0064	26155	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0065	26155	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0066	26161	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0067	26162	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0068	26157	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0069	26161	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0070	26145	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0071	26146	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0072	26147	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0073	26145	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0074	26151	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0075	26176	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0076	26176	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0077	26177	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0078	26173	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0079	26179	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0080	26178	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0081	26178	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0082	26177	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0083	26179	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0084	26183	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0085	26178	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0086	26180	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0087	26179	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0088	26176	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0089	26183	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0090	26176	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0091	26187	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0092	26180	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/1	t0093	26196	1	0	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0094	26175	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0095	26177	1	0	0	0	1	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0096	26178	1	0	0	0	1	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0097	26184	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0098	26181	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0099	26178	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602