JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIN2B_chr12_13532337_13986602	0/0	t0100	26178	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0101	26178	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0102	26175	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0103	26177	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0104	26177	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0105	26179	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0106	26176	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0107	26177	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0108	26146	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0109	26146	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0110	26145	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0111	26146	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0112	26150	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0113	26150	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0114	26146	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0115	26147	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0116	26146	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0117	26146	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0118	26146	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0119	26146	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0120	26146	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0121	26155	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0122	26150	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0123	26149	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0124	26182	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0125	26150	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0126	26148	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0127	26149	1	0	0	0	1	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0128	26150	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0129	26149	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0130	26150	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0131	26148	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0132	26150	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0133	26150	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0134	26150	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0135	26150	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0136	26181	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0137	26153	1	0	0	0	1	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0138	26153	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0139	26153	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0140	26153	1	0	0	0	1	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0141	26153	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0142	26178	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0143	26177	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0144	26182	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0145	26146	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0146	26177	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0147	26150	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	t0148	26150	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2C_chr17_74837023_74864885	0/1	t0001	570	333	73	60	142	15	42	copy fasta	GRIN2C	chr17	74837023	74864885