JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIN2C_chr17_74837023_74864885	0/0	t0002	568	7	2	3	0	1	1	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	t0003	570	7	6	1	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	t0004	579	5	5	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	t0005	570	3	3	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	t0006	570	1	1	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	1/0	t0007	570	1	0	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	t0008	570	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	t0009	570	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	t0010	570	1	0	0	0	0	1	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2D_chr19_48388668_48449931	0/1	t0001	1501	176	37	50	66	4	18	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	1/0	t0002	1501	175	49	20	77	6	22	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0003	1501	2	1	1	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0004	1501	2	1	1	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0005	1501	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0006	1501	1	1	0	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0007	1501	1	1	0	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0008	1501	1	0	1	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0009	1501	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0010	1501	1	1	0	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0011	1501	1	1	0	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0012	1501	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0013	1501	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0014	1501	1	0	1	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	t0015	1547	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN3A_chr9_101564352_101743647	0/0	t0001	4491	54	13	12	24	1	4	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0002	4491	36	2	12	19	1	2	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/1	t0003	4491	27	0	10	10	0	6	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0004	4492	26	0	5	17	2	2	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0005	4491	23	17	2	1	0	3	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0006	4491	21	11	5	0	4	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0007	4492	20	0	2	17	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	1/0	t0008	4491	13	6	1	2	1	2	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0009	4492	11	0	0	5	0	6	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0010	4491	10	2	1	4	0	3	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0011	4491	10	4	0	6	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0012	4491	8	2	0	5	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0013	4491	5	4	1	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0014	4491	5	3	1	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0015	4491	4	0	0	4	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0016	4491	4	4	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0017	4491	2	0	2	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0018	4491	2	2	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0019	4491	2	0	0	0	2	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0020	4491	2	2	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0021	4491	2	1	1	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0022	4491	2	0	0	0	2	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0023	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0024	4491	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0025	4492	1	0	0	0	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0026	4492	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647