JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIN3A_chr9_101564352_101743647	0/0	t0027	4492	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0028	4492	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0029	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0030	4491	1	0	0	0	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0031	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0032	4492	1	0	0	0	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0033	4491	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0034	4491	1	0	1	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0035	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0036	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0037	4492	1	0	1	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0038	4491	1	0	0	0	1	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0039	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0040	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0041	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0042	4491	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0043	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0044	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0045	4491	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0046	4491	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0047	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0048	4491	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0049	4492	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0050	4492	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0051	4491	1	0	1	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0052	4491	1	0	0	0	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0053	4492	1	0	0	0	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0054	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0055	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0056	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	t0057	4491	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3B_chr19_995419_1014732	1/0	t0001	150	306	66	50	146	12	31	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/1	t0002	150	137	29	34	50	6	17	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	t0003	150	2	2	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	t0004	150	1	1	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRINA_chr8_143985056_143998415	1/1	t0001	743	166	25	35	82	4	18	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	t0002	743	96	49	12	21	4	10	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	t0003	744	41	9	13	13	1	5	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	t0004	744	35	8	8	11	1	7	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	t0005	743	6	0	0	6	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	t0006	743	2	2	0	0	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	t0007	743	1	0	0	0	0	1	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	t0008	744	1	0	0	0	0	1	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	t0009	743	1	0	0	1	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	t0010	744	1	0	0	1	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	t0011	743	1	1	0	0	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	t0012	744	1	0	0	1	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRIP1_chr12_66342431_66684076	0/1	t0001	1760	92	20	22	33	5	11	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	1/0	t0002	1761	75	21	12	26	3	12	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0003	1761	10	10	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076