JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIP1_chr12_66342431_66684076	0/0	t0004	1764	9	9	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0005	1762	7	2	1	1	1	2	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0006	1766	5	5	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0007	1764	5	5	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0008	1756	5	0	1	4	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0009	1764	3	3	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0010	1762	2	1	0	0	1	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0011	1761	2	0	0	2	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0012	1761	2	0	0	2	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0013	1761	1	0	1	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0014	1760	1	0	1	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0015	1763	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0016	1764	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0017	1760	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0018	1760	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	t0019	1761	1	0	0	0	0	1	copy fasta	GRIP1	chr12	66342431	66684076
GRIP2_chr3_14484107_14545342	0/0	t0001	4592	31	0	15	14	1	1	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0002	4592	20	0	2	18	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0003	4593	16	0	5	9	0	2	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/1	t0004	4592	12	0	2	6	1	2	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0005	4592	11	0	8	2	1	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0006	4592	10	6	3	0	0	1	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0007	4593	10	0	0	10	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0008	4593	10	0	2	7	0	1	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0009	4593	10	4	0	6	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0010	4593	8	8	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0011	4592	8	0	5	3	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0012	4593	8	0	0	8	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0013	4593	8	8	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0014	4592	7	0	1	6	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0015	4593	7	6	1	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0016	4593	6	1	0	3	0	2	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0017	4593	5	0	0	2	1	2	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0018	4593	5	0	0	1	0	4	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0019	4592	5	0	4	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0020	4592	4	0	0	4	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0021	4592	4	0	1	0	2	1	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0022	4593	4	0	0	3	0	1	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0023	4593	4	1	0	1	0	2	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0024	4592	4	0	0	2	2	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0025	4593	4	1	2	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0026	4593	4	0	0	4	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0027	4593	4	0	0	4	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0028	4593	4	0	0	4	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0029	4593	4	1	0	0	1	2	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0030	4592	4	4	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0031	4592	3	0	0	0	2	1	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0032	4592	3	0	0	3	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0033	4592	3	3	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	t0034	4593	3	0	2	0	0	1	copy fasta	GRIP2	chr3	14484107	14545342