Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMMECR1L_chr2_127856630_127890956	0/0	t0005	3760	24	16	4	3	0	1	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0006	3760	7	7	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0007	3761	5	5	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0008	3755	4	0	0	4	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0009	3760	2	0	0	0	0	2	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0010	3760	2	1	1	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0011	3760	2	2	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0012	3760	1	0	0	0	1	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0013	3760	1	0	0	0	0	1	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0014	3760	1	0	1	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0015	3760	1	0	0	1	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0016	3755	1	1	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0017	3760	1	1	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0018	3755	1	1	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0019	3755	1	1	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0020	3751	1	0	0	0	0	1	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0021	3755	1	1	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0022	3761	1	0	1	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0023	3760	1	1	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0024	3760	1	0	0	0	0	1	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0025	3760	1	0	1	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0026	3760	1	0	1	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0027	3760	1	1	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0028	3756	1	1	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0029	3760	1	1	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0030	3755	1	1	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	t0031	3755	1	1	0	0	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1_chrX_110189186_110323085	1/1	t0001	4349	125	28	17	67	4	7	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0002	4352	6	5	1	0	0	0	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0003	4349	5	0	2	0	1	2	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0004	4350	4	0	0	0	0	4	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0005	4348	3	2	1	0	0	0	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0006	4348	2	2	0	0	0	0	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0007	4349	2	2	0	0	0	0	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0008	4349	2	2	0	0	0	0	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0009	4350	2	0	0	0	0	2	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0010	4352	1	1	0	0	0	0	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0011	4348	1	0	1	0	0	0	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0012	4349	1	0	0	1	0	0	copy fasta	AMMECR1	chrX	110189186	110323085
AMMECR1_chrX_110189186_110323085	0/0	t0013	4349	1	0	0	0	0	1	copy fasta	AMMECR1	chrX	110189186	110323085
AMN1_chr12_31666142_31734021	1/0	t0001	1176	299	52	53	157	8	28	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/1	t0002	1176	84	24	15	29	7	8	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	t0003	1176	27	8	4	13	1	1	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	t0004	1176	6	6	0	0	0	0	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	t0005	1178	5	5	0	0	0	0	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	t0006	1176	4	0	4	0	0	0	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	t0007	1176	2	2	0	0	0	0	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	t0008	1187	1	0	0	1	0	0	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	t0009	1176	1	0	0	0	0	1	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	t0010	1176	1	0	0	1	0	0	copy fasta	AMN1	chr12	31666142	31734021