JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRIPAP1_chrX_48968723_49007264	0/0	t0002	508	3	0	1	2	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	t0003	507	2	0	0	2	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	t0004	499	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	1/0	t0005	506	1	0	0	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	t0006	507	1	0	1	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	t0007	509	1	1	0	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	t0008	507	1	1	0	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	t0009	507	1	0	1	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	t0010	506	1	1	0	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRK2_chr11_67261473_67291556	1/1	t0001	1334	261	56	55	124	6	18	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	t0002	1334	32	30	2	0	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	t0003	1334	2	0	1	0	0	1	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	t0004	1334	1	0	0	0	0	1	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	t0005	1334	1	0	1	0	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	t0006	1334	1	0	0	1	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	t0007	1334	1	0	1	0	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	t0008	1334	1	0	0	1	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	t0009	1334	1	1	0	0	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	t0010	1334	1	1	0	0	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK3_chr22_25559675_25734294	0/1	t0001	7213	17	3	5	8	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0002	7211	8	2	1	4	0	1	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0003	7215	8	1	4	2	1	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0004	7209	6	4	1	1	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0005	7213	4	0	0	4	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0006	7205	4	4	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0007	7213	4	3	0	1	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0008	7207	4	3	0	0	0	1	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0009	7209	4	0	3	0	0	1	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0010	7211	4	0	2	0	0	2	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0011	7214	4	4	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0012	7219	4	0	1	2	0	1	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0013	7213	4	0	1	0	0	3	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0014	7204	3	0	1	0	0	2	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0015	7215	3	0	0	3	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0016	7211	3	0	3	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0017	7205	3	3	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0018	7212	3	3	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0019	7217	3	0	0	1	2	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0020	7205	3	3	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0021	7221	3	3	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0022	7211	2	2	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0023	7209	2	2	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0024	7212	2	0	1	1	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0025	7215	2	0	1	1	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0026	7217	2	2	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0027	7209	2	2	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0028	7213	2	0	2	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0029	7215	2	0	2	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0030	7221	2	0	0	2	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0031	7205	2	2	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294