JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRK3_chr22_25559675_25734294	0/0	t0082	7212	1	0	1	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0083	7216	1	0	1	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0084	7209	1	1	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0085	7219	1	1	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0086	7217	1	1	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0087	7221	1	1	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	t0088	7211	1	1	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK4_chr4_2958571_3045760	1/1	t0001	636	135	25	31	60	6	11	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	t0002	636	76	29	17	15	7	8	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	t0003	636	38	14	6	13	1	4	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	t0004	636	7	5	1	0	0	1	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	t0005	636	4	3	1	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	t0006	636	4	3	1	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	t0007	636	1	0	1	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	t0008	636	1	0	0	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	t0009	636	1	1	0	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	t0010	636	1	0	0	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK5_chr10_119202571_119464745	0/0	t0001	5020	29	8	7	11	1	2	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0002	5019	15	0	3	6	3	3	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/1	t0003	5014	15	0	1	10	2	1	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0004	5021	10	5	1	2	0	2	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0005	5020	7	1	3	0	1	2	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0006	5019	6	1	0	0	2	3	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0007	5020	6	4	0	1	0	1	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0008	5020	5	5	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0009	5019	5	1	4	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0010	5020	4	4	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0011	5020	4	2	0	2	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0012	5019	4	1	0	0	1	2	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0013	5021	3	3	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0014	5019	2	2	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0015	5017	2	2	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0016	5021	2	2	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0017	5018	2	0	1	0	1	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0018	5020	2	0	0	0	0	2	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0019	5018	2	1	0	0	0	1	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0020	5019	2	0	2	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0021	5019	2	0	2	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0022	5018	2	0	1	0	0	1	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0023	5018	2	2	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0024	5019	2	1	0	0	0	1	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0025	5021	2	0	0	1	0	1	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0026	5026	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0027	5026	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0028	5026	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0029	5025	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	1/0	t0030	5026	1	0	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0031	5014	1	0	0	1	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0032	5017	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0033	5018	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745