JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRK5_chr10_119202571_119464745	0/0	t0084	5020	1	0	0	0	1	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0085	5022	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0086	5022	1	0	0	0	0	1	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0087	5019	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0088	5019	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0089	5019	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	t0090	5020	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK6_chr5_177421676_177447891	1/1	t0001	1272	326	78	65	131	9	41	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	t0002	1272	27	1	10	15	0	1	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	t0003	1272	6	0	4	0	2	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	t0004	1272	4	0	0	4	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	t0005	1272	4	3	1	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	t0006	1272	4	3	1	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	t0007	1270	4	4	0	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	t0008	1272	2	2	0	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	t0009	1272	2	0	0	2	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	t0010	1272	2	1	1	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	t0011	1272	1	0	0	0	1	0	copy fasta	GRK6	chr5	177421676	177447891
GRK7_chr3_141758408_141824352	0/0	t0001	4848	101	16	18	52	4	11	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	1/0	t0002	4848	81	1	17	52	2	8	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0003	4848	23	6	8	1	5	3	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0004	4845	18	0	3	13	0	2	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0005	4848	16	13	3	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0006	4848	15	1	2	9	0	3	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0007	4848	15	12	3	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/1	t0008	4848	12	0	8	0	0	3	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0009	4848	7	3	0	4	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0010	4848	6	6	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0011	4848	5	5	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0012	4844	5	0	1	4	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0013	4849	5	4	0	0	0	1	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0014	4850	3	3	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0015	4848	3	0	0	3	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0016	4848	3	3	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0017	4848	2	2	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0018	4848	2	2	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0019	4848	2	0	0	0	0	2	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0020	4848	2	0	0	2	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0021	4849	2	2	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0022	4847	2	1	0	0	0	1	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0023	4848	2	0	0	0	2	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0024	4848	2	2	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0025	4848	2	0	0	2	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0026	4848	2	2	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0027	4848	1	0	0	1	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0028	4848	1	0	0	1	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0029	4845	1	0	1	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0030	4849	1	0	0	0	0	1	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0031	4849	1	0	0	0	0	1	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0032	4849	1	1	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352