JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GRK7_chr3_141758408_141824352	0/0	t0033	4849	1	0	0	1	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0034	4849	1	1	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0035	4848	1	0	0	0	0	1	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0036	4848	1	0	0	1	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0037	4848	1	0	0	0	1	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0038	4849	1	1	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0039	4849	1	0	0	0	0	1	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0040	4848	1	0	0	1	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0041	4848	1	0	0	1	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0042	4848	1	1	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0043	4849	1	1	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0044	4848	1	1	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0045	4848	1	1	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	t0046	4849	1	1	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRM1_chr6_146024062_146442601	0/0	t0001	3261	39	12	8	15	2	2	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/1	t0002	3261	29	15	2	3	5	3	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	1/0	t0003	3262	21	1	7	8	1	3	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0004	3262	14	4	3	4	0	3	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0005	3262	8	8	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0006	3262	8	8	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0007	3262	5	5	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0008	3261	2	0	2	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0009	3262	2	2	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0010	3262	2	2	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0011	3262	2	1	1	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0012	3262	2	2	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0013	3262	2	2	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0014	3262	2	2	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0015	3261	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0016	3261	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0017	3261	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0018	3262	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0019	3262	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0020	3262	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0021	3262	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0022	3262	1	0	1	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0023	3261	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0024	3262	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0025	3262	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0026	3261	1	0	0	0	0	1	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0027	3261	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0028	3262	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0029	3262	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0030	3262	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0031	3262	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0032	3260	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0033	3261	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	t0034	3261	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM2_chr3_51702068_51723613	1/1	t0001	738	323	82	72	119	14	34	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	t0002	738	4	0	0	4	0	0	copy fasta	GRM2	chr3	51702068	51723613